About Simedo

A home for molecular dynamics simulations. Built for scientists, students, and the curious.

Simedo started from a simple frustration: the most beautiful science of our time — the atomic motions of proteins, DNA, drugs binding to their targets — sits locked inside academic supercomputers, impossible for most people to see. Running a simulation yourself means downloading half a dozen separate pieces of software, learning each one, and then waiting hours or days for a result — assuming your computer can run it at all. Existing viewers are powerful but ugly, command-line only, and isolated from any kind of community.

We wanted a place where a high-school student can watch a real spike protein move, a grad student can share their thesis simulation with their advisor in a single link, and a senior researcher can browse what other groups around the world are doing this week.

That place is Simedo.

The vision

Make molecular dynamics legible to anyone curious enough to look. Pair beautiful 3D rendering with an AI guide that explains what you're looking at, sourced from public databases — not made up. Build the social layer scientific platforms have always lacked.

Who we are

Simedo is built entirely by one person — me, Noah Benjamin, a soon-to-be bioinformation technology student at Aalto University in Finland. I'm open to collaborators.

Get in touch

Drop us a line via the contact form.